SPACEGERM shiny app (archived, see GitLab for active fork)
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Updated
Nov 9, 2018 - R
SPACEGERM shiny app (archived, see GitLab for active fork)
CMap2 Top Coder Data Science Marathon Match
survival of patients using ors on TCGA data
This repository contains the implementation for "Towards Biologically Plausible and Private Gene Expression Data Generation" (accepted at PoPETs 2024)
NanoString classifier based on NGS training set
SPOT - Swift Profiling Of Transcriptomes - a shiny app for gene ranking according to user-defined expression profiles
A library and toolkit for common representation and analysis of gene expression profile data
Predicting the Probability or Occurrence of Relapse for Colorectal Cancer Patients using Gene Expression Data
The goal of iCTC is to detect whether peripheral blood cells have CTCs (circulating tumor cell) or not.
A multi-response Gaussian model capable of accurately estimating the composition of blood samples from their gene expression profiles. Fit on Affymetrix Gene ST gene expression profiles using the glmnet R package.
Arabidopsis EcoGEx (R-📦 + 🕸️-App)
Shared TREM-1 expression signatures of asthma affection and control
add any phylogenetically based transcriptome evolutionary index (TEI) to single-cell data objects
ROSeq - A rank based approach to modeling gene expression with filtered and normalized read count matrix. Takes in the complete filtered and normalized read count matrix, the location of the two sub-populations and the number of cores to be used.
Integrative approach to feature selection combining weighted LASSO and prior biological knowldge
Simple (effin') Enrichment Analysis in R
R package for de novo pathway enrichment using KeyPathwayMiner
Scripts and data from "Towards a global investigation of transcriptomic signatures through co-expression networks and pathway knowledge for the identification of disease mechanisms"
This is a R package that intends to perform all the features possible by tensor decomposition based unsupervised feature extraction
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