genomics
Here are 2,474 public repositories matching this topic...
GORpipe is a tool based on a genomic ordered relational architecture and allows analysis of large sets of genomic and phenotypic tabular data using declarative query language, in a parallel execution engine.
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Jun 4, 2024 - Java
This repository collects pipelines, codes, and some intermediate results for the study of mosaic SNV/Indels for sperm, blood, saliva samples of a transmission genomic study.
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Jun 4, 2024 - Python
Scripts for PASM, TAS/TASeq, and MPAS. We provided perl+R versions, python versions, and an extended snakemake version with all additional annotations. The scripts are useful for the calculation of variant allelic fractions for the validation and quantification of mosaic mutations.
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Jun 4, 2024 - Python
GCModeller: genomics CAD(Computer Assistant Design) Modeller system in .NET language
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Jun 4, 2024 - Visual Basic .NET
Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.
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Jun 4, 2024 - Python
Code repository for the manuscript: Extensive transmission and variation in a functional receptor for praziquantel resistance in endemic Schistosoma mansoni
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Jun 4, 2024
Official code repository for GATK versions 4 and up
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Jun 4, 2024 - Java
Design padlock probes for in-situ sequencing
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Jun 4, 2024 - HTML
An ontology of cell types
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Jun 4, 2024 - Makefile
Source code for JBrowse 2, a modern React-based genome browser
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Jun 4, 2024 - TypeScript
GPF: Genotypes and Phenotypes in Families
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Jun 4, 2024 - Python
starfish: a modular toolkit for giant mobile element annotation
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Jun 4, 2024 - Perl
rnalib: a python-based transcriptomics library
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Jun 4, 2024 - Jupyter Notebook
Nextflow pipeline to download repeat annotations from Ensembl onto the Tree of Life directory structure
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Jun 4, 2024 - Groovy
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