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@BMIRDS

Biomedical Informatics Research and Data Science @ Dartmouth

Popular repositories

  1. deepslide deepslide Public

    Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework f…

    Python 475 135

  2. HistoGAN HistoGAN Public

    Code for "Generative Image Translation for Data Augmentation in Colorectal Histopathology Images" full paper at ML4H Workshop at NeurIPS 2019.

    Python 73 20

  3. 3dMRISegmentation 3dMRISegmentation Public

    Code for NeuroImage: Clinical paper "Automatic post-stroke lesion segmentation on MR images using 3D residual convolutional neural network."

    Python 32 9

  4. medical-image-preprocessing medical-image-preprocessing Public

    Functions for pre-processing large images

    Python 9 3

  5. titan-rtx-benchmark titan-rtx-benchmark Public

    5 1

  6. MORE MORE Public

    Code for "Multi-Ontology Refined Embeddings (MORE): A Hybrid Multi-Ontology and Corpus-based Semantic Representation Model for Biomedical Concepts" in the Journal of Biomedical Informatics.

    Python 5 2

Repositories

Showing 10 of 10 repositories
  • deepslide Public

    Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for classification of high resolution whole-slide images, often microscopy or histopathology images.

    Python 475 GPL-3.0 135 1 0 Updated Sep 7, 2023
  • Slide2Graph Public

    Graph Convolutional Networks for Whole-Slide Analysis in PyTorch

    Python 4 GPL-3.0 1 0 0 Updated Jun 10, 2022
  • cell-heterogeneity-emtscore Public
    Python 0 2 0 0 Updated Mar 16, 2022
  • HistoGAN Public

    Code for "Generative Image Translation for Data Augmentation in Colorectal Histopathology Images" full paper at ML4H Workshop at NeurIPS 2019.

    Python 73 GPL-3.0 20 0 0 Updated Feb 3, 2021
  • MORE Public

    Code for "Multi-Ontology Refined Embeddings (MORE): A Hybrid Multi-Ontology and Corpus-based Semantic Representation Model for Biomedical Concepts" in the Journal of Biomedical Informatics.

    Python 5 GPL-3.0 2 0 0 Updated Oct 6, 2020
  • HealthTranscriptAnnotator Public

    Annotates concepts in patient-physician office visit transcripts.

    Java 0 0 0 0 Updated Jul 17, 2020
  • DifficultyTranslation Public

    Code for "Difficulty Translation in Histopathology Images" full paper at Artificial Intelligence in Medicine (AIME) 2020.

    Python 1 GPL-3.0 1 0 0 Updated Jul 7, 2020
  • 3dMRISegmentation Public

    Code for NeuroImage: Clinical paper "Automatic post-stroke lesion segmentation on MR images using 3D residual convolutional neural network."

    Python 32 GPL-3.0 9 2 0 Updated Jun 9, 2020
  • medical-image-preprocessing Public

    Functions for pre-processing large images

    Python 9 GPL-3.0 3 0 0 Updated Dec 5, 2019
  • titan-rtx-benchmark Public
    5 1 0 0 Updated Jan 22, 2019

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