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@PavlidisLab

Pavlidis lab

The Pavlidis Lab at the University of British Columbia

Pinned

  1. neuroexpresso neuroexpresso Public

    📊 Gene expression in neuroexpresso database

    R 17 1

  2. Gemma Gemma Public

    Genomics data re-analysis

    Java 18 6

  3. markerGeneProfile markerGeneProfile Public

    Marker gene profile estimation method used in NeuroExpresso manuscript

    R 12 2

Repositories

Showing 10 of 61 repositories
  • Gemma Public

    Genomics data re-analysis

    Java 18 Apache-2.0 6 283 33 Updated Jun 8, 2024
  • gsec Public

    Reusable implementation of the Spring Security framework for lab projects

    Java 0 Apache-2.0 0 2 6 Updated Jun 8, 2024
  • rnaseq-pipeline Public

    RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.

    Python 19 Unlicense 4 36 1 Updated Jun 7, 2024
  • bioluigi Public

    Reusable and maintained Luigi tasks to incorporate in bioinformatics pipelines

    Python 9 Apache-2.0 0 6 1 Updated Jun 7, 2024
  • TR_singlecell Public
    R 0 MIT 0 1 0 Updated Jun 1, 2024
  • gotrack Public

    Web-based system and database that provides access to historical records and trends in the Gene Ontology and GO annotations

    Java 1 0 16 5 Updated May 29, 2024
  • ndb Public

    Web application and database providing a harmonized and comprehensive collection of genetic variants published in peer-reviewed literature.

    Java 4 Apache-2.0 0 19 (1 issue needs help) 0 Updated May 29, 2024
  • gemmapy Public
    Python 5 Apache-2.0 1 7 1 Updated May 23, 2024
  • gemma.R Public

    An R wrapper for the Gemma RESTful API

    R 9 Apache-2.0 1 6 1 Updated May 23, 2024
  • GemBrow Public

    The Gemma Browser

    Vue 3 Apache-2.0 1 26 4 Updated May 17, 2024
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