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Issues: stuart-lab/signac
Solution for errors related to
as_cholmod_sparse
or `CRspa...
#1596
opened Jan 18, 2024 by
timoast
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LinkPeaks Error in .width_as_unnamed_integer
bug
Something isn't working
#1717
opened Jun 5, 2024 by
JHCCoder
Integration scATAC with scRNAseq not multiomic
documentation
Documentation help
#1715
opened Jun 4, 2024 by
yamihn
Warning: Error in InsertionBias.ChromatinAssay: Not all hexamers represented in input region
documentation
Documentation help
#1713
opened May 30, 2024 by
luoyyyy
Error in .subscript.2ary(x, i, , drop = TRUE) : subscript out of bounds when running FindIntegrationAnchors
bug
Something isn't working
#1712
opened May 27, 2024 by
sropri92
The normalized signal is zero in CoveragePlot after subset
documentation
Documentation help
#1711
opened May 25, 2024 by
ZhengJIN94
LinkPeaks, FindMarkers functions not working on RStudio AWS Server
bug
Something isn't working
#1706
opened May 22, 2024 by
chsnys
AddChromatinModule function creates NA values in some cells
documentation
Documentation help
#1680
opened Apr 8, 2024 by
Ryuichi30
Check for MACS2 before splitting file
enhancement
New feature or request
#1678
opened Apr 5, 2024 by
AmelZulji
Solution for errors related to
as_cholmod_sparse
or CRsparse_rowSums
#1596
opened Jan 18, 2024 by
timoast
BPcells doesn't work with chromatin Assay
enhancement
New feature or request
#1507
opened Oct 10, 2023 by
LucaTucciarone
ReadMGATK does not work if using -eb option in mgatk
bug
Something isn't working
#1462
opened Jul 31, 2023 by
msteph11
Changing Fragment object annotation style
enhancement
New feature or request
#1370
opened Apr 4, 2023 by
daccachejoe
FeatureMatrix() should count cut sites?
enhancement
New feature or request
#1369
opened Apr 4, 2023 by
nesetozel
Error adding gene names to the differentially accessible peaks
enhancement
New feature or request
#1337
opened Feb 14, 2023 by
KshitijDeoghar
signac can consider adding a function similar to plotPeak2GeneHeatmap in ArchR
enhancement
New feature or request
#1227
opened Sep 27, 2022 by
shijianasdf
Add MACS3 support in PeakCalling
enhancement
New feature or request
#1085
opened Apr 20, 2022 by
ghost
Compute log fold change with linear model
enhancement
New feature or request
#1035
opened Mar 10, 2022 by
danielcgingerich
Enhanced CoveragePlot() options
enhancement
New feature or request
#362
opened Dec 10, 2020 by
zrcjessica
ProTip!
Updated in the last three days: updated:>2024-06-07.