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@talmolab

Talmo Lab at the Salk Institute

Talmo Pereira's research group at the Salk Institute for Biological Studies.

Pinned

  1. sleap sleap Public

    A deep learning framework for multi-animal pose tracking.

    Python 393 93

  2. sleap-io sleap-io Public

    Standalone utilities for SLEAP pose tracking data.

    Python 11 7

  3. sleap-matlab sleap-matlab Public

    Multi-animal pose estimation using SLEAP in MATLAB

    MATLAB 3 2

  4. sleap-anipose sleap-anipose Public

    SLEAP to Anipose triangulation pipeline for 3D multi-animal pose tracking.

    Python 13

  5. internal-dockerfiles internal-dockerfiles Public

    dockerfiles for talmo

    Dockerfile 1

Repositories

Showing 10 of 39 repositories
  • sleap Public

    A deep learning framework for multi-animal pose tracking.

    Python 393 93 68 (3 issues need help) 23 Updated Jun 2, 2024
  • VNL-Brax-Imitation Public

    VNL Implementation of Rodent Imitation Learning

    Python 0 1 0 0 Updated Jun 1, 2024
  • biogtr Public

    Global Tracking Transformers for biological multi-object tracking.

    Python 5 BSD-3-Clause 1 16 6 Updated Jun 1, 2024
  • cosyne_vm Public

    This repository stores the scripts that are locally available on every VM instance we spin up for the COSYNE 2024 conference.

    Python 0 BSD-3-Clause 0 0 0 Updated May 31, 2024
  • stac-mjx Public

    Implementation of STAC using MJX for GPU acceleration. Part of VNL project.

    Python 2 BSD-3-Clause 0 1 0 Updated May 30, 2024
  • keiller-tutorial-data Public

    Data for Keiller Academy tutorial.

    0 BSD-3-Clause 0 0 0 Updated May 30, 2024
  • sleap-nn Public

    Neural network backend for training and inference for animal pose estimation.

    Python 4 GPL-3.0 0 4 2 Updated May 29, 2024
  • sleap-roots Public

    Analysis tools for SLEAP-based plant root phenotyping.

    Python 7 BSD-3-Clause 0 2 0 Updated May 24, 2024
  • sleap-io Public

    Standalone utilities for SLEAP pose tracking data.

    Python 11 BSD-3-Clause 7 12 3 Updated May 22, 2024
  • sleap-anipose Public

    SLEAP to Anipose triangulation pipeline for 3D multi-animal pose tracking.

    Python 13 GPL-3.0 0 8 1 Updated May 16, 2024
View all repositories

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