Python library for reading, writing, and converting computational chemistry file formats and generating input files.
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Updated
May 29, 2024 - Python
Python library for reading, writing, and converting computational chemistry file formats and generating input files.
UCSC Genome Browser source tree. Stable branch: "beta".
forester is a collection of open source libraries of Java and Ruby software for phylogenomics and evolutionary biology research
Toolkit for open antiviral drug discovery by the ASAP Discovery Consortium
Infectious Disease Sequencing Platform
SimTK OpenSim C++ libraries and command-line applications, and Java/Python wrapping.
An FPGA design for simulating biological neurons
A modular inverse QSAR pipeline
📐 Symmetry-corrected RMSD in Python
Implementations of various simulations for integrate and fire models, as well as conductance based models with synaptic neurotransmission
Bioinformatics workflows developed for and used on the St. Jude Cloud project.
List of Computer Science courses with video lectures.
Scansite searches for motifs within proteins that are likely to be phosphorylated by specific protein kinases or bind to domains such as SH2 domains, 14-3-3 domains or PDZ domains.
FinaleToolkit is a package and standalone program to extract fragmentation features of cell-free DNA from paired-end sequencing data.
A comprehensive library for computational molecular biology
Chaste - Cancer Heart And Soft Tissue Environment - main public repository.
A resource for biomedical students and researchers. Includes proteomics software tools like FragPipe, MaxQuant, PDV, SearchGUI, ThermoRawFileParser, and PeptideShaker. Offers a user-friendly interface, automated identification and quantification, comprehensive data analysis, and lightweight clone feature for optimized storage.
Protein Graph Library
BioT5: Enriching Cross-modal Integration in Biology with Chemical Knowledge and Natural Language Associations (EMNLP 2023)
FABind: Fast and Accurate Protein-Ligand Binding (NeurIPS 2023)
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